Suchánek, M., Mannaert, H., Uhnák, P., & Pergl, R. (2024). Bi-directional Transformation between Normalized Systems Elements and Domain Ontologies in OWL. Proceedings of the 15th International Conference on Evaluation of Novel Approaches to Software Engineering - ENASE, 74–85. https://doi.org/10.5220/0009356800740085

Slifka, J., & Pergl, R. (2022). User Interface Modelling Languages for Normalised Systems: Systematic Literature Review. In A. Rocha, H. Adeli, G. Dzemyda, & F. Moreira (Eds.), Information Systems and Technologies (Vol. 470, pp. 349–358). Springer International Publishing. https://doi.org/10.1007/978-3-031-04829-6_31

Knaisl, V., & Pergl, R. (2022). Improving Document Evolvability Based on Normalized Systems Theory. In A. Rocha, H. Adeli, G. Dzemyda, & F. Moreira (Eds.), Information Systems and Technologies (Vol. 469, pp. 131–140). Springer International Publishing. https://doi.org/10.1007/978-3-031-04819-7_14

Skotnica, M., Aparício, M., Pergl, R., & Guerreiro, S. (2021). Process digitalization using blockchain: EU parliament elections case study. Proceedings of the 9th International Conference on Model-Driven Engineering and Software Development. https://doi.org/10.5220/0010229000650075

Suchánek, M., Mannaert, H., Uhnák, P., & Pergl, R. (2021). Towards Evolvable Ontology-Driven Development with Normalized Systems. In R. Ali, H. Kaindl, & L. A. Maciaszek (Eds.), Evaluation of Novel Approaches to Software Engineering (pp. 208–231). Springer International Publishing. https://doi.org/10.1007/978-3-030-70006-5_9

Suchánek, M., & Pergl, R. (2020). Case-Study-Based Review of Approaches for Transforming UML Class Diagrams to OWL and Vice Versa. 22nd IEEE Conference on Business Informatics (CBI 2020), 2020, 270–279. https://doi.org/10.1109/CBI49978.2020.00036

Suchánek, M., Mannaert, H., Uhnák, P., & Pergl, R. (2020). Bi-directional Transformation between Normalized Systems Elements and Domain Ontologies in OWL. Proceedings of the 15th International Conference on Evaluation of Novel Approaches to Software Engineering 2020, 2020, 74–85.

Jacobsen, A., de Miranda Azevedo, R., Juty, N., Batista, D., Coles, S., Cornet, R., Courtot, M., Crosas, M., Dumontier, M., Evelo, C. T., Goble, C., Guizzardi, G., Hansen, K. K., Hasnain, A., Hettne, K., Heringa, J., Hooft, R. W. W., Imming, M., Jeffery, K. G., … Schultes, E. (2020). FAIR Principles: Interpretations and Implementation Considerations. Data Intelligence, 2(1–2), 10–29. https://doi.org/10.1162/dint_r_00024

Sustkova, H. P., Hettne, K. M., Wittenburg, P., Jacobsen, A., Kuhn, T., Pergl, R., Slifka, J., McQuilton, P., Magagna, B., Sansone, S.-A., Stocker, M., Imming, M., Lannom, L., Musen, M., & Schultes, E. (2020). FAIR Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related Resources. Data Intelligence, 2(1–2), 158–170. https://doi.org/10.1162/dint_a_00038

Jones, S., Pergl, R., Hooft, R., Miksa, T., Samors, R., Ungvari, J., Davis, R. I., & Lee, T. (2020). Data Management Planning: How Requirements and Solutions are Beginning to Converge. Data Intelligence, 2(1–2), 208–219. https://doi.org/10.1162/dint_a_00043

McQuilton, P., Batista, D., Beyan, O., Granell, R., Coles, S., Izzo, M., Lister, A. L., Pergl, R., Rocca-Serra, P., Schaap, B., Shanahan, H., Thurston, M., & Sansone, S.-A. (2020). Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data. Data Intelligence, 2(1–2), 151–157. https://doi.org/10.1162/dint_a_00037

Slifka, J., & Pergl, R. (2020). Laying the Foundation for Design System Ontology. In Á. Rocha, H. Adeli, L. P. Reis, S. Costanzo, I. Orovic, & F. Moreira (Eds.), Trends and Innovations in Information Systems and Technologies (Vol. 1159, pp. 778–787). Springer International Publishing. https://doi.org/10.1007/978-3-030-45688-7_76

Knaisl, V., & Pergl, R. (2020). Proposing Ontology-Driven Content Modularization in Documents Based on the Normalized Systems Theory. In Á. Rocha, H. Adeli, L. P. Reis, S. Costanzo, I. Orovic, & F. Moreira (Eds.), Trends and Innovations in Information Systems and Technologies (Vol. 1159, pp. 45–54). Springer International Publishing. https://doi.org/10.1007/978-3-030-45688-7_5

Schultes, E., Magagna, B., Hettne, K. M., Pergl, R., Suchánek, M., & Kuhn, T. (2020). Reusable FAIR Implementation Profiles as Accelerators of FAIR Convergence. In G. Grossmann & S. Ram (Eds.), Advances in Conceptual Modeling (Vol. 12584, pp. 138–147). Springer International Publishing. https://doi.org/10.1007/978-3-030-65847-2_13

Skotnica, M., & Pergl, R. (2020). Das Contract - A Visual Domain Specific Language for Modeling Blockchain Smart Contracts. In D. Aveiro, G. Guizzardi, & J. Borbinha (Eds.), Advances in Enterprise Engineering XIII (pp. 149–166). Springer International Publishing.

Pergl, R., Suchánek, M., Slifka, J., Knaisl, V., Hooft, R., & Kuzak, M. (2019). Data Stewardship Wizard. 2019. https://doi.org/https://doi.org/10.7490/f1000research.1117037.1

Suchánek, M., & Pergl, R. (2019). Evolvability Evaluation of Conceptual-Level Inheritance Implementation Patterns. PATTERNS 2019, The Eleventh International Conference on Pervasive Patterns and Applications, 2019, 1–6. https://www.thinkmind.org/index.php?view=article&articleid=patterns_2019_1_10_78001

Suchánek, M., & Pergl, R. (2019). Mapping UFO-B to BPMN, BORM, and UML Activity Diagram. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (pp. 82–98). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_7

Suchánek, M., & Slifka, J. (2019). Evolvable and Machine-Actionable Modular Reports for Service-Oriented Architecture. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (pp. 43–59). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_4

Knaisl, V. (2019). Proposing an Architecture of an Intelligent Evolvable Document Generation System Based on the Normalized Systems Theory. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (Vol. 366, pp. 70–81). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_6

Pergl, R. (2019). The Two Pillars. Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, 1. KDIR, 5–20.

Pergl, R. (2019). Conceptualisation: Chapters from Harmonising Enterprise and Software Engineering -- a Habilitation Thesis [Habilitation, Czech Technical University in Prague, Faculty of Information Technology]. https://www.researchgate.net/publication/332274993_Conceptualisation_Chapters_from_Harmonising_Enterprise_and_Software_Engineering_--_a_Habilitation_Thesis

Suchánek, M. (2019). Designing an Ontology for Semantic Integration of Various Conceptual Models. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (pp. 3–17). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_1

Šenkýř, D. (2019). SHACL Shapes Generation from Textual Documents. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (Vol. 366, pp. 121–130). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_9

Wittenburg, P., Pergl Sustkova, H., Montesanti, A., Bloemers, S. M., de Waard, S. H., Musen, M. A., Graybeal, J. B., Hettne, K. M., Jacobsen, A., Pergl, R., Hooft, R. W. W., Staiger, C., van Gelder, C. W. G., Knijnenburg, S. L., van Arkel, A. C., Meerman, B., Wilkinson, M. D., Sansone, S.-A., Rocca-Serra, P., … Schultes, E. A. (2019). The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data. http://arxiv.org/abs/1902.11162

Verdonck, M., Gailly, F., Pergl, R., Guizzardi, G., Martins, B., & Pastor, O. (2018). Comparing traditional conceptual modeling with ontology-driven conceptual modeling: An empirical study. Information Systems, 81. https://doi.org/10.1016/j.is.2018.11.009

Rybola, Z., & Pergl, R. (2018). Towards OntoUML for Software Engineering: Optimizing Kinds and Subkinds Transformed into Relational Databases. Enterprise and Organizational Modeling and Simulation, 31–45. https://doi.org/10.1007/978-3-030-00787-4_3

Suchánek, M., & Pergl, R. (2018, October 11). Data Stewardship Wizard for Open Science. Data a znalosti & WIKT 2018, Brno, Czech Republic. http://daz2018.fit.vutbr.cz

Hooft, R., Pergl, R., Suchánek, M., & Gelder, C. van. (2018). Data Stewardship Wizard (poster). F1000Research, 7. https://doi.org/10.7490/f1000research.1115594.1

Suchánek, M., Pergl, R., Hooft, R., & Van Gelder, C. (2018, June 6). Data Stewardship Wizard (poster). ELIXIR All Hands 2018, Berlin, Germany. https://doi.org/10.7490/f1000research.1115594.1

Suchánek, M., & Pergl, R. (2018). Evolvable Documents – an Initial Conceptualization. 39–44.

Suchánek, M., & Pergl, R. (2018). Towards Evolvable Documents with a Conceptualization-Based Case Study. International Journal on Advances in Intelligent Systems, 11(3+4), 212–223. http://www.iariajournals.org/intelligent_systems/tocv11n34.html

Dvořák, O., Pergl, R., & Kroha, P. (2018). Affordance-driven Software Assembling. Advances in Enterprise Engineering XII: 8th Enterprise Engineering Working Conference, EEWC 2018, Luxembourg, Luxembourg, Proceedings. Enterprise Engineering Working Conference, Cham.

Hornáčková, B., Skotnica, M., & Pergl, R. (2018). Exploring a Role of Blockchain Smart Contracts in Enterprise Engineering. In Advances in Enterprise Engineering XII: 8th Enterprise Engineering Working Conference, EEWC 2018, Luxembourg, Luxembourg, Proceedings. Springer International Publishing.

Lukáš Janeček, & Robert Pergl. (2017). Analysing Functional Paradigm Concepts - The JavaScript Case. Recent Advances in Information Systems and Technologies, 5. https://doi.org/10.1007/978-3-319-56535-4

Suchánek, M., Pergl, R., & Hooft, R. (2017, November 15). Data Stewardship Portal (poster). ELIXIR CZ Annual Conference 2017, Třešť, Czech Republic. https://doi.org/10.7490/f1000research.1115691.1

Jiménez, R. C., Kuzak, M., Alhamdoosh, M., Barker, M., Batut, B., Borg, M., Capella-Gutierrez, S., Chue Hong, N., Cook, M., Corpas, M., Flannery, M., Garcia, L., Gelpí, J. Ll., Gladman, S., Goble, C., González Ferreiro, M., Gonzalez-Beltran, A., Griffin, P. C., Grüning, B., … Crouch, S. (2017). Four simple recommendations to encourage best practices in research software. F1000Research, 6. https://doi.org/10.12688/f1000research.11407.1

Janeček, L., & Pergl, R. (2017). Analysing Functional Paradigm Concepts: The JavaScript Case. Recent Advances in Information Systems and Technologies, 882–891. https://doi.org/10.1007/978-3-319-56535-4_86

Dvořák, O., Pergl, R., & Kroha, P. (2017). Tackling the Flexibility-Usability Trade-off in Component-Based Software Development. Recent Advances in Information Systems and Technologies, 861–871. https://doi.org/10.1007/978-3-319-56535-4_84

Hooft, R., Pergl, R., & Suchánek, M. (2017, March 22). DM Planning Portal (poster). ELIXIR All Hands 2017, Rome, Italy. https://www.elixir-europe.org/events/elixir-all-hands-2017

Uhnák, P., & Pergl, R. (2017). Instance Visualizations - ESUG17 - IWST17. http://dl.acm.org/citation.cfm?doid=3139903.3139912

Blizničenko, J., Papoulias, N., Pergl, R., & Stinckwich, S. (2017). Towards Modularity in Live Visual Modeling: A Case Study with OpenPonk and Kendrick. Proceedings of the 12th Edition of the International Workshop on Smalltalk Technologies, 3:1-3:10. https://doi.org/10.1145/3139903.3139908

Rybola, Z., & Pergl, R. (2017). Towards OntoUML for Software Engineering: Transformation of Kinds and Subkinds into Relational Databases. Computer Science and Information Systems, 14(3), 913–937. https://doi.org/10.2298/CSIS170109035R

Skotnica, M., van Kervel, S. J. H., & Pergl, R. (2017). A DEMO Machine - A Formal Foundation for Execution of DEMO Models. In Advances in Enterprise Engineering XI: 7th Enterprise Engineering Working Conference, EEWC 2017, Antwerp, Belgium, May 8-12, 2017, Proceedings (pp. 18–32). Springer International Publishing.

Mráz, O., Náplava, P., Pergl, R., & Skotnica, M. (2017). Converting DEMO PSI Transaction Pattern into BPMN: A Complete Method. In Advances in Enterprise Engineering XI: 7th Enterprise Engineering Working Conference, EEWC 2017, Antwerp, Belgium, May 8-12, 2017, Proceedings (pp. 85–98). Springer International Publishing.

Deryck, M., Dvořák, O., De Bruyn, P., & Verelst, J. (2017). Investigating the Evolvability of Financial Domain Models. Advances in Enterprise Engineering XI, 861–871. https://doi.org/https://doi.org/10.1007/978-3-319-57955-9_9

Uhnák, P., & Pergl, R. (2017). Ad-hoc Runtime Object Structure Visualizations with MetaLinks. Proceedings of the 12th Edition of the International Workshop on Smalltalk Technologies, 7:1-7:10. https://doi.org/10.1145/3139903.3139912

Zdeněk Rybola, & Robert Pergl. (2017). Transformation of Kinds and Subkinds into Relational Databases: A Running Example (Technical Report No. TR-FIT-2017; p. 36). Czech Technical University in Prague.

Rybola, Z., & Pergl, R. (2016). Towards OntoUML for Software Engineering: Transformation of Anti-Rigid Sortal Types into Relational Databases. Model and Data Engineering, 1–15. https://doi.org/10.1007/978-3-319-45547-1_1

Rybola, Z., & Pergl, R. (2016). Towards OntoUML for Software Engineering: Transformation of Rigid Sortal Types into Relational Databases. Proceedings of {FedCSIS} 2016, 8, 1581–1591. https://doi.org/10.15439/2016F250