Our Publications

Suchánek, M., & Pergl, R. (2020). Case-Study-Based Review of Approaches for Transforming UML Class Diagrams to OWL and Vice Versa. 22nd IEEE Conference on Business Informatics (CBI 2020), 2020, 270–279. https://doi.org/10.1109/CBI49978.2020.00036
Suchánek, M., Mannaert, H., Uhnák, P., & Pergl, R. (2020). Bi-directional Transformation between Normalized Systems Elements and Domain Ontologies in OWL. Proceedings of the 15th International Conference on Evaluation of Novel Approaches to Software Engineering 2020, 2020, 74–85.
Jones, S., Pergl, R., Hooft, R., Miksa, T., Samors, R., Ungvari, J., Davis, R. I., & Lee, T. (2020). Data Management Planning: How Requirements and Solutions are Beginning to Converge. Data Intelligence, 2(1–2), 208–219. https://doi.org/10.1162/dint_a_00043
Sustkova, H. P., Hettne, K. M., Wittenburg, P., Jacobsen, A., Kuhn, T., Pergl, R., Slifka, J., McQuilton, P., Magagna, B., Sansone, S.-A., Stocker, M., Imming, M., Lannom, L., Musen, M., & Schultes, E. (2020). FAIR Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related Resources. Data Intelligence, 2(1–2), 158–170. https://doi.org/10.1162/dint_a_00038
McQuilton, P., Batista, D., Beyan, O., Granell, R., Coles, S., Izzo, M., Lister, A. L., Pergl, R., Rocca-Serra, P., Schaap, B., Shanahan, H., Thurston, M., & Sansone, S.-A. (2020). Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data. Data Intelligence, 2(1–2), 151–157. https://doi.org/10.1162/dint_a_00037
Jacobsen, A., de Miranda Azevedo, R., Juty, N., Batista, D., Coles, S., Cornet, R., Courtot, M., Crosas, M., Dumontier, M., Evelo, C. T., Goble, C., Guizzardi, G., Hansen, K. K., Hasnain, A., Hettne, K., Heringa, J., Hooft, R. W. W., Imming, M., Jeffery, K. G., … Schultes, E. (2020). FAIR Principles: Interpretations and Implementation Considerations. Data Intelligence, 2(1–2), 10–29. https://doi.org/10.1162/dint_r_00024
Skotnica, M., & Pergl, R. (2020). Das Contract - A Visual Domain Specific Language for Modeling Blockchain Smart Contracts. In D. Aveiro, G. Guizzardi, & J. Borbinha (Eds.), Advances in Enterprise Engineering XIII (pp. 149–166). Springer International Publishing.
Pergl, R., Suchánek, M., Slifka, J., Knaisl, V., Hooft, R., & Kuzak, M. (2019). Data Stewardship Wizard (2019). 2019. https://doi.org/https://doi.org/10.7490/f1000research.1117037.1
Suchánek, M., & Pergl, R. (2019). Evolvability Evaluation of Conceptual-Level Inheritance Implementation Patterns. PATTERNS 2019, The Eleventh International Conference on Pervasive Patterns and Applications, 2019, 1–6. https://www.thinkmind.org/index.php?view=article&articleid=patterns_2019_1_10_78001
Pergl, R. (2019). The Two Pillars. Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, 1. KDIR, 5–20.
Pergl, R. (2019). Conceptualisation: Chapters from Harmonising Enterprise and Software Engineering -- a Habilitation Thesis [Habilitation, Czech Technical University in Prague, Faculty of Information Technology]. https://www.researchgate.net/publication/332274993_Conceptualisation_Chapters_from_Harmonising_Enterprise_and_Software_Engineering_--_a_Habilitation_Thesis
Suchánek, M. (2019). Designing an Ontology for Semantic Integration of Various Conceptual Models. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (pp. 3–17). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_1
Suchánek, M., & Slifka, J. (2019). Evolvable and Machine-Actionable Modular Reports for Service-Oriented Architecture. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (pp. 43–59). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_4
Suchánek, M., & Pergl, R. (2019). Mapping UFO-B to BPMN, BORM, and UML Activity Diagram. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (pp. 82–98). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_7
Šenkýř, D. (2019). SHACL Shapes Generation from Textual Documents. In R. Pergl, E. Babkin, R. Lock, P. Malyzhenkov, & V. Merunka (Eds.), Enterprise and Organizational Modeling and Simulation (Vol. 366, pp. 121–130). Springer International Publishing. https://doi.org/10.1007/978-3-030-35646-0_9
Wittenburg, P., Pergl Sustkova, H., Montesanti, A., Bloemers, S. M., de Waard, S. H., Musen, M. A., Graybeal, J. B., Hettne, K. M., Jacobsen, A., Pergl, R., Hooft, R. W. W., Staiger, C., van Gelder, C. W. G., Knijnenburg, S. L., van Arkel, A. C., Meerman, B., Wilkinson, M. D., Sansone, S.-A., Rocca-Serra, P., … Schultes, E. A. (2019). The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data. http://arxiv.org/abs/1902.11162
Verdonck, M., Gailly, F., Pergl, R., Guizzardi, G., Martins, B., & Pastor, O. (2018). Comparing traditional conceptual modeling with ontology-driven conceptual modeling: An empirical study. Information Systems, 81. https://doi.org/10.1016/j.is.2018.11.009
Rybola, Z., & Pergl, R. (2018). Towards OntoUML for Software Engineering: Optimizing Kinds and Subkinds Transformed into Relational Databases. Enterprise and Organizational Modeling and Simulation, 31–45. https://doi.org/10.1007/978-3-030-00787-4_3
Suchánek, M., & Pergl, R. (2018, October 11). Data Stewardship Wizard for Open Science. Data a znalosti & WIKT 2018, Brno, Czech Republic. http://daz2018.fit.vutbr.cz
Hooft, R., Pergl, R., Suchánek, M., & Gelder, C. van. (2018). Data Stewardship Wizard (poster). F1000Research, 7. https://doi.org/10.7490/f1000research.1115594.1
Suchánek, M., Pergl, R., Hooft, R., & Van Gelder, C. (2018, June 6). Data Stewardship Wizard (poster). ELIXIR All Hands 2018, Berlin, Germany. https://doi.org/10.7490/f1000research.1115594.1
Suchánek, M., & Pergl, R. (2018). Evolvable Documents – an Initial Conceptualization. 39–44.
Suchánek, M., & Pergl, R. (2018). Towards Evolvable Documents with a Conceptualization-Based Case Study. International Journal on Advances in Intelligent Systems, 11(3+4), 212–223. http://www.iariajournals.org/intelligent_systems/tocv11n34.html
Dvořák, O., Pergl, R., & Kroha, P. (2018). Affordance-driven Software Assembling. Advances in Enterprise Engineering XII: 8th Enterprise Engineering Working Conference, EEWC 2018, Luxembourg, Luxembourg, Proceedings. Enterprise Engineering Working Conference, Cham.
Hornáčková, B., Skotnica, M., & Pergl, R. (2018). Exploring a Role of Blockchain Smart Contracts in Enterprise Engineering. In Advances in Enterprise Engineering XII: 8th Enterprise Engineering Working Conference, EEWC 2018, Luxembourg, Luxembourg, Proceedings. Springer International Publishing.
Lukáš Janeček, & Robert Pergl. (2017). Analysing Functional Paradigm Concepts - The JavaScript Case. Recent Advances in Information Systems and Technologies, 5. https://doi.org/10.1007/978-3-319-56535-4
Suchánek, M., Pergl, R., & Hooft, R. (2017, November 15). Data Stewardship Portal (poster). ELIXIR CZ Annual Conference 2017, Třešť, Czech Republic. https://doi.org/10.7490/f1000research.1115691.1
Jiménez, R. C., Kuzak, M., Alhamdoosh, M., Barker, M., Batut, B., Borg, M., Capella-Gutierrez, S., Chue Hong, N., Cook, M., Corpas, M., Flannery, M., Garcia, L., Gelpí, J. Ll., Gladman, S., Goble, C., González Ferreiro, M., Gonzalez-Beltran, A., Griffin, P. C., Grüning, B., … Crouch, S. (2017). Four simple recommendations to encourage best practices in research software. F1000Research, 6. https://doi.org/10.12688/f1000research.11407.1
Janeček, L., & Pergl, R. (2017). Analysing Functional Paradigm Concepts: The JavaScript Case. Recent Advances in Information Systems and Technologies, 882–891. https://doi.org/10.1007/978-3-319-56535-4_86
Dvořák, O., Pergl, R., & Kroha, P. (2017). Tackling the Flexibility-Usability Trade-off in Component-Based Software Development. Recent Advances in Information Systems and Technologies, 861–871. https://doi.org/10.1007/978-3-319-56535-4_84
Hooft, R., Pergl, R., & Suchánek, M. (2017, March 22). DM Planning Portal (poster). ELIXIR All Hands 2017, Rome, Italy. https://www.elixir-europe.org/events/elixir-all-hands-2017
Uhnák, P., & Pergl, R. (2017). Instance Visualizations - ESUG17 - IWST17. http://dl.acm.org/citation.cfm?doid=3139903.3139912
Blizničenko, J., Papoulias, N., Pergl, R., & Stinckwich, S. (2017). Towards Modularity in Live Visual Modeling: A Case Study with OpenPonk and Kendrick. Proceedings of the 12th Edition of the International Workshop on Smalltalk Technologies, 3:1–3:10. https://doi.org/10.1145/3139903.3139908
Rybola, Z., & Pergl, R. (2017). Towards OntoUML for Software Engineering: Transformation of Kinds and Subkinds into Relational Databases. Computer Science and Information Systems, 14(3), 913–937. https://doi.org/10.2298/CSIS170109035R
Skotnica, M., van Kervel, S. J. H., & Pergl, R. (2017). A DEMO Machine - A Formal Foundation for Execution of DEMO Models. In Advances in Enterprise Engineering XI: 7th Enterprise Engineering Working Conference, EEWC 2017, Antwerp, Belgium, May 8-12, 2017, Proceedings (pp. 18–32). Springer International Publishing.
Mráz, O., Náplava, P., Pergl, R., & Skotnica, M. (2017). Converting DEMO PSI Transaction Pattern into BPMN: A Complete Method. In Advances in Enterprise Engineering XI: 7th Enterprise Engineering Working Conference, EEWC 2017, Antwerp, Belgium, May 8-12, 2017, Proceedings (pp. 85–98). Springer International Publishing.
Deryck, M., Dvořák, O., De Bruyn, P., & Verelst, J. (2017). Investigating the Evolvability of Financial Domain Models. Advances in Enterprise Engineering XI, 861–871. https://doi.org/https://doi.org/10.1007/978-3-319-57955-9_9
Uhnák, P., & Pergl, R. (2017). Ad-hoc Runtime Object Structure Visualizations with MetaLinks. Proceedings of the 12th Edition of the International Workshop on Smalltalk Technologies, 7:1–7:10. https://doi.org/10.1145/3139903.3139912
Zdeněk Rybola, & Robert Pergl. (2017). Transformation of Kinds and Subkinds into Relational Databases: A Running Example (Technical Report TR-FIT-2017; p. 36). Czech Technical University in Prague.
Rybola, Z., & Pergl, R. (2016). Towards OntoUML for Software Engineering: Transformation of Anti-Rigid Sortal Types into Relational Databases. Model and Data Engineering, 1–15. https://doi.org/10.1007/978-3-319-45547-1_1
Rybola, Z., & Pergl, R. (2016). Towards OntoUML for Software Engineering: Transformation of Rigid Sortal Types into Relational Databases. Proceedings of {FedCSIS} 2016, 8, 1581–1591. https://doi.org/10.15439/2016F250
Rybola, Z., & Pergl, R. (2016, June 13). Towards OntoUML for Software Engineering: Introduction to the Transformation of OntoUML into Relational Databases. Enterprise and Organizational Modeling and Simulation. 12th International Workshop on Enterprise & Organizational Modeling and Simulation, Ljubljana, Slovenia. https://doi.org/10.1007/978-3-319-49454-8_5
Skotnica, M., Kervel, S. J. H. van, & Pergl, R. (2016). Towards the Ontological Foundations for the Software Executable DEMO Action and Fact Models. Advances in Enterprise Engineering X, 151–165. https://doi.org/10.1007/978-3-319-39567-8_10
Uhnák, P., & Pergl, R. (2016). The OpenPonk Modeling Platform. Proceedings of the 11th Edition of the International Workshop on Smalltalk Technologies, 14:1–14:11. https://doi.org/10.1145/2991041.2991055
Náplava, P., & Pergl, R. (2015). Empirical Study of Applying the DEMO Method for Improving BPMN Process Models in Academic Environment. 2015 IEEE 17th Conference on Business Informatics, 2, 18–26. https://doi.org/10.1109/CBI.2015.12
Dudok, E., Guerreiro, S., Babkin, E., Pergl, R., & Kervel, S. J. H. van. (2015). Enterprise Operational Analysis Using DEMO and the Enterprise Operating System. In Advances in Enterprise Engineering IX (pp. 3–18). Springer International Publishing.
Dvořák, O., Pergl, R., & Kroha, P. (2015). Confirmation Engine Design Based on PSI Theory. 17th IEEE Conference on Business Informatics, Workshop on Cross-Organizational and Crosscompany BPM (XOC-BPM) Lisbon.
Merunka, V., Pergl, R., & Tůma, J. (2015). BORM-II and UML as Accessibility Process in Knowledge and Business Modelling. In New Trends in Networking, Computing, E-learning, Systems Sciences, and Engineering (pp. 1–6). Springer International Publishing.
Podloucký, M., Pergl, R., & Kroha, P. (2015). Revisiting the BORM OR Diagram Composition Pattern. Enterprise and Organizational Modeling and Simulation, 231, 102–113. https://doi.org/10.1007/2F978-3-319-24626-0_8
Tuma, J., Merunka, V., & Pergl, R. (2014). Object-Oriented FSM-Based Approach to Process Modelling. In Modern Trends and Techniques in Computer Science (csoc 2014) (Vol. 285, pp. 597–606). Springer-Verlag Berlin.