We participated in the ELIXIR-CZ Annual Conference 2017 in Třešť. We presented our work within the Interoperability platform, where we work on the international Data Stewardship Portal project and other projects such as ontology and UFO (A and B) application in the field of bone marrow donation. You can see our presentation below along with the photos from the event.
If you are interested in our ELIXIR-related work, take a loot at our offered thesis topics or contact us…
Today, 10 October 2017, precisely at 10:10 (UTC) is a key moment for OntoUML. Together with our foreign colleagues, we launched the long-awaited OntoUML.org community portal, which is not just full of useful information on Ontology of UFO and OntoUML (we teach at our faculty in subject BI-KOM, formerly BI-OMO), but it also allows to search and share opinions, experiences and projects. It represents a place where all the know-how associated with OntoUML will be concentrated, a place that has been missing for a long time. We hope it will significantly help broaden and develop language, as well as basic ontology, which development was started by Dr. Guizzardi in 2005.
We already have a lot of ideas and plans to develop and improve this portal, and we will be glad to welcome everyone who wants to work with us and join the community!
The second ELIXIR CZ annual conference will be held on 15 and 16 November 2017 and we are preparing to participate actively – to present our work, which we are doing in ELIXIR platform in cooperation with foreign colleagues. You will be able to browse the presentation on this site after the conference, now you can see the poster of the conference itself (below) and consider your participation. We are looking forward to meet you there!
Following our collaboration with the University of Antwerp (see our older post), two members of our research group, Marek Suchánek and Peter Uhnák, participated in the Normalized Systems Summer School 2017 in Antwerp. During this very exciting event they learned how to design, analyze, create and customize Normalized Systems and worked on their own projects related to the NS theory and tooling, specifically about visualization, evolvable documents and conceptual modelling. Together with Dr. Robert Pergl, prof. Jan Verelst and prof. Herwig Mannaert they also discussed further broadening and intensifying of the collaboration between CCMi & FIT CTU in Prague, the NSX spin-off and also Faculty of Applied Economics – the largest faculty of the University of Antwerp.
This opens new prospects of interesting theses topics, research projects and other challenging opportunities. We want to repeat NS Summer School with more students again the next year, as well as to improve and deepen our collaboration continually over time.
Are you interested? Please check theses offer page or contact us by email (perglr, suchama4) directly…
NS Summer School ’17 – professors & students
University of Antwerp – The Science Park (Darwin building)
As a part of our work within the ELIXIR-CZ and in cooperation with the ELIXIR-NL we are working on Data Stewardship Portal project, which aims to streamline and improve the creation of the Data Management plans primarily for scientific projects in the field of life sciences.
We’ve presented this project at the ELIXIR All Hands 2017 in Rome, where we introduced our approach and future plans during own (4 hour) workshop. Participants had the opportunity to try to work with a preliminary version of the portal as well as edit and create the content (the Knowledge Model). During the workshop as well as a previous poster session we’ve received not only positive feedback, but also interesting suggestions and ideas.
On 24th August, 2016 Robert Pergl with Peter Uhnák presented article about our open modelling platform OpenPonk, formerly known as DynaCASE, on this year’s conference ESUG (European Smalltalk User Group), which is held here in Prague at CTU, within IWST (International Workshop on Smalltalk Technologies) block. Even if you coudn’t attend the conference or just our presentation, you can take a look here.
The following day, Peter Uhnák presented platform OpenPonk itself during main schedule of ESUG 2016 conference. You can enjoy this presentation here as well.
Formetis Consultants, our Dutch industrial partner and sponsor invited our students working on enterprise engineering topics into their headquarters in Boxtel, The Netherlands. We presented our work, got valuable feedback and support from the CEO Steven van Kervel. Prof. Jan Dietz also came to see our progress. The involved topics were:
The CIAO! App – a diploma thesis of Bc. Roman Lánský focused on designing a simple messaging and task management application based on the PSI theory and implementing a prototype.
Transformation of DEMO models into BPMN – a diploma thesis of Bc. Ondřej Mráz, which continues the work of Štěpán Heller, MSc.: an effort to bring the DEMO rigour into the BPMN world and vice versa: providing an intuitive visualisation of DEMO transactions.
Ongoing work on the Action Model in Formetis DEMO Engine done by Bc. Marek Skotnica as his diploma thesis.
Bc. Peter Uhnák presented ourDynaCASE project and we discussed the synergies with the DEMO Engine.
We also had a very nice social event with great Belgium beer! :-). Thank you, Formetis, for your kind support and hospitality!
Infrastructure ELIXIR (European Life-Science Infrastructure for Biological Information) was founded for the purpose of creating and linking distributed research infrastructure for storage, processing and analysis of life sciences data. It responds to the growing needs of the research community which generates a large and exponentially growing amount of data needing to be stored efficiently, to extract key information and access them. Czech Republic became one of the first members of the consortium and is currently involved in a number of activities within the consortium.
Bioinformatics at CTU has its firm position especially in the form Faculty of Biomedical Engineering and activities at other faculties. On FIT is a research about searching compression of DNA sequences using the dictionary methods and approximate searching patterns in genomes (research group Prague Stringology Club). Most recently, Center for conceptual modeling and implementation get involved in those activities and launched cooperation within ELIXIR-CZ to increase interoperability of bioinformatics data – effort, which is very topical for example in The Netherlands, Slovenia and other countries of ELIXIR infrastructure. The advance in this area is primarily in applying ontological methods in combination with software tools.
ELIXIR-CZ awaits in 2016 great development of investigated topics as well as the infrastructure (technology, cooperation, projects, financing). Involvement of CTU and FIT brings significant opportunities for our researchers and students.